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These are anime in the mystery genre.

Mystery Rating
Angels of Death (TV) Good
Another (TV) Excellent
BEASTARS (TV 2) Very good
Beautiful Bones: Sakurako’s Investigation (TV) Very good
Black Butler: Book of Circus (TV) Very good
Black Butler: Book of Murder (OAV) Very good
Boogiepop and Others (TV 2019) Excellent
Boogiepop Phantom (TV) Very good
Caligula (TV) Very good
Chaos;Child (TV) Very good
Chaos;HEAd (TV) Very good
(Le) Chevalier D'Eon (TV) Very good
Death Note Relight 2 - L's Successors (special) Very good
Denpa teki na Kanojo (OAV) Excellent
(The) Disappearance of Haruhi Suzumiya (movie) Excellent
Dorohedoro (TV) Very good
(The) Duke of Death and His Maid (TV) Very good
Engage Kiss (TV) Very good
ERASED (TV) Masterpiece
(The) Garden of Sinners (movie series) Masterpiece
Ghost Hound (TV) Excellent
Ghost Hunt (TV) Excellent
Ghost in the Shell: Arise (OAV) Excellent
Golden Kamuy (TV 2) Excellent
Golden Kamuy (TV 3) Excellent
Golden Kamuy (TV 4) Very good
Gosick (TV) Very good
.hack//Liminality (OAV) Masterpiece
.hack//Quantum (OAV) Excellent
Haibane Renmei (TV) Masterpiece
Hanamonogatari (TV) Excellent
Heaven's Memo Pad (TV) Masterpiece
Hero Mask (ONA) Very good
Higurashi no Naku Koro ni Kaku ~Outbreak~ (OAV) Very good
Higurashi: When They Cry – GOU (TV) Very good
Hitori No Shita The Outcast 2 (Raten Taisho Chapter) (TV) Very good
Hitori No Shita The Outcast 2 Zensei Chapter (TV) Very good
HYOUKA (TV) Very good
Interlude (OAV) Masterpiece
K (TV) Masterpiece
Kaze no Yojimbo (TV) Excellent
King of Thorn (movie) Excellent
Lord El-Melloi II's Case Files: Rail Zeppelin Grace note (TV) Very good
Loups=Garous - The Motion Picture Very good
Love of Kill (TV) Very good
Lupin the 3rd: Napoleon's Dictionary (special) Very good
Madlax (TV) Excellent
Midnight Occult Civil Servants (OAV) Good
Monster (TV) Masterpiece
Moriarty the Patriot (TV) Excellent
Moriarty the Patriot (TV 2) Masterpiece
(The) Mystic Archives of Dantalian (TV) Good
(The) Mystic Archives of Dantalian: Sleeping Beauty (OAV) Good
Night Head 2041 (TV) Good
Noir (TV) Excellent
Occultic;Nine (TV) Very good
Okamikakushi - Masque of the Wolf (TV) Very good
Oshi no Ko (TV) Very good
Oshi no Ko (TV 2) Very good
Paprika (movie) Masterpiece
Paranoia Agent (TV) Good
Perfect Blue (movie) Masterpiece
Persona 4: The Animation (TV) Good
PERSONA 5 the Animation (TV) Good
Pluto (ONA) Masterpiece
Psychic Detective Yakumo (TV) Good
Psycho-Pass 3 (TV) Good
Re:ZERO -Starting Life in Another World- (TV 3) Excellent
Red Garden (TV) Excellent
Serial Experiments Lain (TV) Excellent
(The) Skull Man (TV) Good
Steins;Gate (TV) Masterpiece
Summer Time Rendering (TV) Masterpiece
Terror in Resonance (TV) Very good
They Were 11 (movie) Excellent
Top Secret ~The Revelation~ (TV) Very good
Umineko - When They Cry (TV) Excellent
Un-Go (TV) Excellent
Un-Go episode:0 Inga-ron (movie) Excellent
When They Cry - Higurashi (TV) Masterpiece
When They Cry - Kai (TV) Masterpiece
When They Cry - Rei (OAV) Excellent
(The) Witch and the Beast (TV) Very good
World’s End Harem (TV) Decent